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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs112341182 chr14:74357664 T/A 1.39E-7 405 14.67 17.2 3.93 KM Plot
LGG rs112342305 chr14:74352536 G/A 0 406 14.92 17.03 1.23 KM Plot
LGG rs1123587 chr9:95544004 A/G 0.000233 403 15.15 18.4 7.12 KM Plot
LGG rs11239618 chr10:42987904 A/G 3.48E-6 407 7.8 15.57 15.2 KM Plot
LGG rs112397747 chr8:1732125 G/C 1.58E-6 396 15.33 15.57 5.42 KM Plot
LGG rs11239827 chr10:43406150 C/T 6.92E-6 404 15.7 12.12 17.07 KM Plot
LGG rs112404884 chr7:55967707 G/A 1.74E-10 405 15.2 15.93 7.8 KM Plot
LGG rs112406176 chr12:102302719 A/AT 6.59E-5 399 14.53 18.72 13.15 KM Plot
LGG rs112431890 chr5:92839610 A/AGC 1.67E-5 407 15.17 16.17 18.57 KM Plot
LGG rs112439050 chr8:1734759 C/T 1.59E-6 394 15.35 15.43 5.42 KM Plot
LGG rs112453972 chr9:14640439 T/C 0.000142 398 15.35 17.23 4.87 KM Plot
LGG rs112474547 chr1:247278228 T/A 0 400 15.25 15.37 3.2 KM Plot
LGG rs112487572 chr7:55968469 A/C 1.63E-10 406 15.25 16.23 7.8 KM Plot
LGG rs11250267 chr10:1156487 A/G 1.41E-5 407 15.93 15.03 8.7 KM Plot
LGG rs112512398 chr9:126950268 T/C 1.25E-6 407 15.37 11.1 12.92 KM Plot